A B C D E F G H I K L M N O P R S T U V W X Y Z

S

save() - Method in class hu.elte.animaltracker.controller.zones.ZoneDesignerController

save(String) - Method in class hu.elte.animaltracker.examples.radialmaze.RadialMazeConfig

save() - Method in class hu.elte.animaltracker.examples.radialmaze.RadialMazeController

save(String) - Method in class hu.elte.animaltracker.examples.watermaze.WaterMazeConfig

save() - Method in class hu.elte.animaltracker.examples.watermaze.WaterMazeController

saveAbstractTrackingParameters(String, List<AbstractTrackingParameter>) - Static method in class hu.elte.animaltracker.model.TrackingIO

Saves an AbstractTrackingParameter list as a binary file.

saveAnalyzeSettings(String, List<ZoneSetting>) - Static method in class hu.elte.animaltracker.model.TrackingIO

Saves a ZoneSetting list as a binary file.

saveCoreTracking(String, CoreTracker) - Static method in class hu.elte.animaltracker.model.TrackingIO

Saves a CoreTracker object as a binary file.

saveObject(String, Object) - Static method in class hu.elte.animaltracker.model.TrackingIO

Saves an object as a binary file.

saveParameterConfigs() - Method in class hu.elte.animaltracker.controller.analyzing.TrackAnalyzerController

saveTackingTask() - Method in class hu.elte.animaltracker.controller.tracking.TrackerController

saveToFile() - Method in class hu.elte.animaltracker.controller.zones.ZoneDesignerController

saveTrack(ObjectLocation[], String) - Static method in class hu.elte.animaltracker.model.TrackingIO

Saves an ObjectLocation array as a text file.

saveTrackingConfig() - Method in class hu.elte.animaltracker.controller.tracking.TrackerController

saveTrackingTask(String, TrackingTask) - Static method in class hu.elte.animaltracker.model.TrackingIO

Saves a TrackingTask object as a binary file.

saveZoneSettings() - Method in class hu.elte.animaltracker.controller.analyzing.TrackAnalyzerController

saveZoneUnits(String, List<ZoneUnit>) - Static method in class hu.elte.animaltracker.model.TrackingIO

Saves a ZoneUnit list as a binary file.

scale - Variable in class hu.elte.animaltracker.model.analyzing.TrackingParameterDistance

scale - Variable in class hu.elte.animaltracker.model.analyzing.TrackingParameterTime

scaleDistance - Variable in class hu.elte.animaltracker.model.analyzing.TrackingParameterVelocityVector

scaleTime - Variable in class hu.elte.animaltracker.model.analyzing.TrackingParameterVelocityVector

scrollPane - Variable in class hu.elte.animaltracker.view.analyzing.ZoneAnalyzeParameterView

scrollPane - Variable in class hu.elte.animaltracker.view.analyzing.ZoneSettingsView

scrollPane - Variable in class hu.elte.animaltracker.view.tracking.ProcessDialog

scrollPane - Variable in class hu.elte.animaltracker.view.zones.SetSubtractionDialog

sd - Variable in class hu.elte.animaltracker.model.analyzing.TrackingResult

sd - Variable in class hu.elte.animaltracker.model.tracking.blobs.BaseBlob

select(TreeSelectionModel) - Method in class hu.elte.animaltracker.controller.zones.ZoneDesignerController

set(int, ObjectLocation) - Method in class hu.elte.animaltracker.model.tracking.TrackSequence

setActiveImage() - Method in class hu.elte.animaltracker.controller.analyzing.TrackAnalyzerController

setActiveImage(ImagePlus) - Method in class hu.elte.animaltracker.controller.analyzing.TrackAnalyzerController

setActiveImage() - Method in class hu.elte.animaltracker.controller.tracking.TrackerController

setActiveImage() - Method in class hu.elte.animaltracker.examples.radialmaze.RadialMazeController

setActiveImage() - Method in class hu.elte.animaltracker.examples.watermaze.WaterMazeController

setAllowManualTracking(boolean) - Method in class hu.elte.animaltracker.controller.tracking.TrackingEditorController

setAnalyzeSettings(List<ZoneSetting>) - Method in class hu.elte.animaltracker.controller.analyzing.TrackAnalyzerController

setAnchor(int) - Method in class hu.elte.animaltracker.controller.zones.EditZoneUnitController

setAngleVisible(boolean) - Method in class hu.elte.animaltracker.examples.watermaze.WaterMazeController

setBackground() - Method in class hu.elte.animaltracker.controller.tracking.ColorBackgroundSubtractorController

setBackground(int) - Method in class hu.elte.animaltracker.model.tracking.filtering.ColorBackgroundSubtractor

Sets the color background to the specified combined RGB value.

setBlobComparator(BlobComparator) - Method in class hu.elte.animaltracker.model.tracking.CoreTracker

Sets the BlobComparator.

setBlobDetector(BlobDetector) - Method in class hu.elte.animaltracker.model.tracking.CoreTracker

Sets the BlobDetector.

setCoreTracker(CoreTracker) - Method in class hu.elte.animaltracker.controller.tracking.TrackerController

setCoreTracker(CoreTracker) - Method in class hu.elte.animaltracker.model.tracking.TrackingTask

Sets the CoreTracker object.

setData(E) - Method in class hu.elte.animaltracker.model.analyzing.DataPoint

Sets stored data.

setDirection(Vector2D) - Method in class hu.elte.animaltracker.model.tracking.blobs.BaseBlob

Sets a displacement vector.

setDirection(BaseBlob) - Method in class hu.elte.animaltracker.model.tracking.blobs.BaseBlob

Sets a displacement vector using another blob.

setDirection() - Method in class hu.elte.animaltracker.model.tracking.Vector2D

Calculates the direction from p1 and p2.

setDirection(double) - Method in class hu.elte.animaltracker.model.tracking.Vector2D

Sets the new direction in radians.

setExclusive(TreeSelectionModel) - Method in class hu.elte.animaltracker.controller.zones.ZoneDesignerController

SetExclusive - Class in hu.elte.animaltracker.model.zones

Unary 'exclusive or' operator.

SetExclusive(List<ZoneUnit>) - Constructor for class hu.elte.animaltracker.model.zones.SetExclusive

SetExclusive(ZoneUnit...) - Constructor for class hu.elte.animaltracker.model.zones.SetExclusive

setFilters(List<AbstractFilter>) - Method in class hu.elte.animaltracker.model.tracking.CoreTracker

Sets the list of filters.

setFirstFrame(int) - Method in class hu.elte.animaltracker.model.tracking.TrackingTask

Sets the starting frame.

setFrame(int) - Method in class hu.elte.animaltracker.model.analyzing.DataPoint

Sets the frame position.

setID - Variable in class hu.elte.animaltracker.model.zones.SetOperator

setImage() - Method in class hu.elte.animaltracker.controller.tracking.BackgroundSubtractorController

setImage(ImagePlus) - Method in class hu.elte.animaltracker.controller.tracking.TrackerController

setImageInfo() - Method in class hu.elte.animaltracker.model.tracking.blobs.ByteBlob

setImageInfo() - Method in class hu.elte.animaltracker.model.tracking.blobs.ColorBlob

setImageInfo() - Method in class hu.elte.animaltracker.model.tracking.blobs.FloatBlob

setImageInfo() - Method in class hu.elte.animaltracker.model.tracking.blobs.ShortBlob

setInSide(boolean) - Method in class hu.elte.animaltracker.model.tracking.postprocessing.Outline

setIntersection(TreeSelectionModel) - Method in class hu.elte.animaltracker.controller.zones.ZoneDesignerController

SetIntersection - Class in hu.elte.animaltracker.model.zones

Unary intersection operator.

SetIntersection(List<ZoneUnit>) - Constructor for class hu.elte.animaltracker.model.zones.SetIntersection

SetIntersection(ZoneUnit...) - Constructor for class hu.elte.animaltracker.model.zones.SetIntersection

setIteration(int) - Method in class hu.elte.animaltracker.model.tracking.postprocessing.Dilate

Sets the number of iterations.

setLastFrame(int) - Method in class hu.elte.animaltracker.model.tracking.TrackingTask

Sets the end frame.

setLocation(double, double) - Method in class hu.elte.animaltracker.model.zones.Primitive

setLocation(double, double) - Method in class hu.elte.animaltracker.model.zones.SetOperator

setLocation(double, double) - Method in interface hu.elte.animaltracker.model.zones.ZoneUnit

Sets the new location of this ZoneUnit.

setMask(ZoneUnit, int, int) - Method in class hu.elte.animaltracker.model.tracking.thresholding.AbstractThresholder

Sets a mask.

setMax(Double) - Method in class hu.elte.animaltracker.model.tracking.postprocessing.SizeFilter

Sets the maximum size limit.

setMaximumDistance(Double) - Method in class hu.elte.animaltracker.model.tracking.blobdetecting.SimpleDistanceComparator

Sets the maximum search distance.

setMaze() - Method in class hu.elte.animaltracker.examples.radialmaze.RadialMazeController

setMaze(Polygon) - Method in class hu.elte.animaltracker.examples.radialmaze.RadialMazeController

setMazeVisible(boolean) - Method in class hu.elte.animaltracker.examples.radialmaze.RadialMazeController

setMin(Double) - Method in class hu.elte.animaltracker.model.tracking.postprocessing.SizeFilter

Sets the minimum size limit.

setMinDistance(double) - Method in class hu.elte.animaltracker.model.analyzing.TrackingParameterImmobilityTime

Sets the minimum distance which defines movement.

setMinTimeInFrame(int) - Method in class hu.elte.animaltracker.model.analyzing.TrackingParameterImmobilityTime

Sets the number of frame windows where displacement is observed.

setName(String) - Method in class hu.elte.animaltracker.model.zones.Primitive

setName(String) - Method in class hu.elte.animaltracker.model.zones.SetOperator

setName(String) - Method in interface hu.elte.animaltracker.model.zones.ZoneUnit

Sets the name of this ZoneUnit.

SetOperator - Class in hu.elte.animaltracker.model.zones

Derived classes of SetOperator carry out the basic logical operations amongst ZoneUnits.

SetOperator(List<ZoneUnit>) - Constructor for class hu.elte.animaltracker.model.zones.SetOperator

Creates a new logical operation amongst elements of the given ZoneUnit list.

SetOperatorListener - Interface in hu.elte.animaltracker.model.listeners

This interface contains action events of the SetOperator class.

setP1(float, float) - Method in class hu.elte.animaltracker.model.tracking.Vector2D

Sets starting point.

setP1(Point2D.Float) - Method in class hu.elte.animaltracker.model.tracking.Vector2D

Sets starting point.

setP2(float, float) - Method in class hu.elte.animaltracker.model.tracking.Vector2D

Sets end point.

setP2(Point2D.Float) - Method in class hu.elte.animaltracker.model.tracking.Vector2D

Sets end point.

setParameter(AbstractTrackingParameter) - Method in class hu.elte.animaltracker.controller.analyzing.ParameterController

setParameterConfigs(List<AbstractTrackingParameter>) - Method in class hu.elte.animaltracker.controller.analyzing.TrackAnalyzerController

setParameters(List<AbstractTrackingParameter>) - Method in class hu.elte.animaltracker.controller.analyzing.ZoneSetting

setPixelInformation(ImageProcessor, List<BaseBlob>) - Static method in class hu.elte.animaltracker.model.tracking.blobs.BaseBlob

Sets the original pixel values of the blobs.

setPixelInformation(ImageProcessor, BaseBlob) - Static method in class hu.elte.animaltracker.model.tracking.blobs.BaseBlob

Sets the original pixel values of the blob.

setPlatform() - Method in class hu.elte.animaltracker.examples.watermaze.WaterMazeController

setPlatformVisible(boolean) - Method in class hu.elte.animaltracker.examples.watermaze.WaterMazeController

setPoint(double, double) - Method in class hu.elte.animaltracker.controller.zones.EditZoneUnitController.PolygonPoint

setPoint(ObjectLocation[]) - Method in class hu.elte.animaltracker.model.tracking.TrackingTask

Sets the array of ObjectLocations.

setPool() - Method in class hu.elte.animaltracker.examples.watermaze.WaterMazeController

setPool(Rectangle) - Method in class hu.elte.animaltracker.examples.watermaze.WaterMazeController

setPool(OvalRoi) - Method in class hu.elte.animaltracker.examples.watermaze.WaterMazeController

setPoolVisible(boolean) - Method in class hu.elte.animaltracker.examples.watermaze.WaterMazeController

setPostProcessors(List<PostProcessor>) - Method in class hu.elte.animaltracker.model.tracking.CoreTracker

Sets the list of postprocessors.

setProcessor(ImageProcessor) - Method in class hu.elte.animaltracker.view.tracking.TrackingPorcessImageWindow

setRadius(double) - Method in class hu.elte.animaltracker.model.tracking.filtering.MedianFilter

setReferenceBlob(BaseBlob) - Method in class hu.elte.animaltracker.model.tracking.CoreTracker

Sets the reference blob for blob comparison.

setRoi() - Method in class hu.elte.animaltracker.controller.zones.EditZoneUnitController

setRoi(Roi) - Method in class hu.elte.animaltracker.model.zones.Primitive

Sets a new ROI.

setScale(double) - Method in class hu.elte.animaltracker.model.analyzing.TrackingParameterDistance

Sets the pixel/unit ratio

setScale(double) - Method in class hu.elte.animaltracker.model.analyzing.TrackingParameterTime

Sets the frame rate (sec/frame)

setScaleDistance(double) - Method in class hu.elte.animaltracker.model.analyzing.TrackingParameterVelocityVector

setScaleTime(double) - Method in class hu.elte.animaltracker.model.analyzing.TrackingParameterVelocityVector

setSelectedRow(int) - Method in class hu.elte.animaltracker.controller.analyzing.TrackAnalyzerController

setSequences(List<TrackSequence>) - Method in class hu.elte.animaltracker.controller.analyzing.ParameterController

setSigma(double) - Method in class hu.elte.animaltracker.model.tracking.filtering.GaussianBlurFilter

Sets the sigma value of the GaussianBlur filter.

setSize2(double, double) - Method in class hu.elte.animaltracker.controller.zones.EditZoneUnitController

setSubtraction(TreeSelectionModel) - Method in class hu.elte.animaltracker.controller.zones.ZoneDesignerController

SetSubtraction - Class in hu.elte.animaltracker.model.zones

Unary subtraction operator.

SetSubtraction(List<ZoneUnit>) - Constructor for class hu.elte.animaltracker.model.zones.SetSubtraction

SetSubtraction(ZoneUnit...) - Constructor for class hu.elte.animaltracker.model.zones.SetSubtraction

SetSubtractionDialog - Class in hu.elte.animaltracker.view.zones

SetSubtractionDialog(List<ZoneUnit>) - Constructor for class hu.elte.animaltracker.view.zones.SetSubtractionDialog

setTarget(Point2D.Float) - Method in class hu.elte.animaltracker.examples.watermaze.TrackingParameterAnglePreference

Sets the location of the hidden platform

setThreshold() - Method in class hu.elte.animaltracker.controller.tracking.ColorBackgroundSubtractorController

setThreshold(double) - Method in class hu.elte.animaltracker.model.tracking.filtering.ColorBackgroundSubtractor

Sets the threshold value.

setThresholder(AbstractThresholder) - Method in class hu.elte.animaltracker.model.tracking.CoreTracker

Sets the Thresholder.

setTrackigArea(ZoneUnit) - Method in class hu.elte.animaltracker.controller.tracking.TrackerController

setTrackingArea() - Method in class hu.elte.animaltracker.controller.tracking.TrackerController

setTrackingArea(ZoneUnit) - Method in class hu.elte.animaltracker.model.tracking.TrackingTask

Sets the tracking area.

setTrackingTask(TrackingTask) - Method in class hu.elte.animaltracker.controller.tracking.TrackerController

setTrackVisible(boolean) - Method in class hu.elte.animaltracker.examples.radialmaze.RadialMazeController

setTrackVisible(boolean) - Method in class hu.elte.animaltracker.examples.watermaze.WaterMazeController

setTransform(double, double, double, double) - Method in class hu.elte.animaltracker.controller.zones.EditZoneUnitController

setTransform() - Method in class hu.elte.animaltracker.view.zones.EditZoneUnitView

setUnion(TreeSelectionModel) - Method in class hu.elte.animaltracker.controller.zones.ZoneDesignerController

SetUnion - Class in hu.elte.animaltracker.model.zones

Unary union operator.

SetUnion(List<ZoneUnit>) - Constructor for class hu.elte.animaltracker.model.zones.SetUnion

SetUnion(ZoneUnit...) - Constructor for class hu.elte.animaltracker.model.zones.SetUnion

setUnit(String) - Method in class hu.elte.animaltracker.model.analyzing.AbstractTrackingParameter

Sets the name of the unit.

setValueAt(Object, int, int) - Method in class hu.elte.animaltracker.controller.analyzing.TrackParametersTableModel

setVectorVisible(boolean) - Method in class hu.elte.animaltracker.examples.radialmaze.RadialMazeController

setVectorVisible(boolean) - Method in class hu.elte.animaltracker.examples.watermaze.WaterMazeController

setVisible(boolean) - Method in class hu.elte.animaltracker.model.zones.Primitive

setVisible(boolean) - Method in class hu.elte.animaltracker.model.zones.SetOperator

setVisible(boolean) - Method in interface hu.elte.animaltracker.model.zones.ZoneUnit

Sets the visibility of the ZoneUnit.

setZones(List<ZoneUnit>) - Method in class hu.elte.animaltracker.controller.analyzing.TrackAnalyzerController

shiftWith(Point2D.Float) - Method in class hu.elte.animaltracker.model.tracking.Vector2D

Shifts this vector by the given point.

SHORT_IMAGE - Static variable in class hu.elte.animaltracker.model.tracking.SourceClassifier

Supports 16-bit grayscale images.

ShortBlob - Class in hu.elte.animaltracker.model.tracking.blobs

This class can store the 16-bit pixel information.

ShortBlob(HashSet<Point>) - Constructor for class hu.elte.animaltracker.model.tracking.blobs.ShortBlob

ShortBlob(BaseBlob, ImageProcessor) - Constructor for class hu.elte.animaltracker.model.tracking.blobs.ShortBlob

show() - Method in class hu.elte.animaltracker.controller.tracking.BackgroundSubtractorController

showAnalyzer() - Method in class hu.elte.animaltracker.examples.radialmaze.RadialMazeController

showAsRoi(TreeSelectionModel) - Method in class hu.elte.animaltracker.controller.zones.ZoneDesignerController

showBlobDetectorDlg() - Method in class hu.elte.animaltracker.controller.tracking.TrackerController

showBlobs() - Method in class hu.elte.animaltracker.controller.tracking.TrackerController

showComperatorsDlg() - Method in class hu.elte.animaltracker.controller.tracking.TrackerController

showFiltersDialog() - Method in class hu.elte.animaltracker.controller.tracking.TrackerController

showGUI() - Method in class hu.elte.animaltracker.examples.watermaze.TrackingParameterAnglePreference

showGUI() - Method in class hu.elte.animaltracker.model.analyzing.TrackingParameterDistance

showGUI() - Method in class hu.elte.animaltracker.model.analyzing.TrackingParameterImmobilityTime

showGUI() - Method in class hu.elte.animaltracker.model.analyzing.TrackingParameterTime

showGUI() - Method in class hu.elte.animaltracker.model.analyzing.TrackingParameterVelocityVector

showGUI() - Method in interface hu.elte.animaltracker.model.CustomisableProcess

Shows the GUI if it exists.

showGUI() - Method in class hu.elte.animaltracker.model.tracking.blobdetecting.BaseBlobDetector

Unimplemented function.

showGUI() - Method in class hu.elte.animaltracker.model.tracking.blobdetecting.SimpleDistanceComparator

showGUI() - Method in class hu.elte.animaltracker.model.tracking.filtering.BackgroundSubtractor

showGUI() - Method in class hu.elte.animaltracker.model.tracking.filtering.ColorBackgroundSubtractor

showGUI() - Method in class hu.elte.animaltracker.model.tracking.filtering.GaussianBlurFilter

showGUI() - Method in class hu.elte.animaltracker.model.tracking.filtering.MedianFilter

showGUI() - Method in class hu.elte.animaltracker.model.tracking.postprocessing.Dilate

showGUI() - Method in class hu.elte.animaltracker.model.tracking.postprocessing.Outline

showGUI() - Method in class hu.elte.animaltracker.model.tracking.postprocessing.SizeFilter

showGUI() - Method in class hu.elte.animaltracker.model.tracking.thresholding.ColorThresholder

showGUI() - Method in class hu.elte.animaltracker.model.tracking.thresholding.GrayscaleThresholder

showLastFrameDialog() - Method in class hu.elte.animaltracker.controller.tracking.TrackerController

showParameterSelector(int[]) - Method in class hu.elte.animaltracker.controller.analyzing.TrackAnalyzerController

showParametersSettings() - Method in class hu.elte.animaltracker.controller.analyzing.TrackAnalyzerController

showPostPorcessingDlg() - Method in class hu.elte.animaltracker.controller.tracking.TrackerController

showResult() - Method in class hu.elte.animaltracker.controller.analyzing.TrackAnalyzerController

showSettings() - Method in class hu.elte.animaltracker.controller.analyzing.TrackAnalyzerController

showSummary() - Method in class hu.elte.animaltracker.examples.watermaze.WaterMazeController

showThresholdDlg() - Method in class hu.elte.animaltracker.controller.tracking.TrackerController

showTracker() - Method in class hu.elte.animaltracker.examples.radialmaze.RadialMazeController

showTracker() - Method in class hu.elte.animaltracker.examples.watermaze.WaterMazeController

sigma - Variable in class hu.elte.animaltracker.model.tracking.filtering.GaussianBlurFilter

SimpleDistanceComparator - Class in hu.elte.animaltracker.model.tracking.blobdetecting

This class selects the blob closest to the reference blob.

SimpleDistanceComparator() - Constructor for class hu.elte.animaltracker.model.tracking.blobdetecting.SimpleDistanceComparator

SimpleDistanceComparator(Double) - Constructor for class hu.elte.animaltracker.model.tracking.blobdetecting.SimpleDistanceComparator

size - Variable in class hu.elte.animaltracker.model.tracking.blobs.BaseBlob

size() - Method in class hu.elte.animaltracker.model.tracking.TrackSequence

SizeFilter - Class in hu.elte.animaltracker.model.tracking.postprocessing

This class removes any blob from the image the area of which lies outside of the minimum-maximum range.

SizeFilter() - Constructor for class hu.elte.animaltracker.model.tracking.postprocessing.SizeFilter

SizeFilter(Double, Double) - Constructor for class hu.elte.animaltracker.model.tracking.postprocessing.SizeFilter

Sets the minimum-maximum range.

SourceClassifiable - Interface in hu.elte.animaltracker.model.tracking

This interface provides information from a filter whether or not it can process the current source image.

SourceClassifier - Class in hu.elte.animaltracker.model.tracking

This class decides whether the source image suits one of flags.

SourceClassifier() - Constructor for class hu.elte.animaltracker.model.tracking.SourceClassifier

start() - Method in class hu.elte.animaltracker.model.Parallel

This procedure starts the parallel processing and returns when all threads are finished.

startTracking() - Method in class hu.elte.animaltracker.controller.tracking.TrackerController

subList(int, int) - Method in class hu.elte.animaltracker.model.tracking.TrackSequence

subtractionIcon - Variable in class hu.elte.animaltracker.controller.zones.RoiTreeCellRenderer

sum - Variable in class hu.elte.animaltracker.model.analyzing.TrackingResult

A B C D E F G H I K L M N O P R S T U V W X Y Z